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string数据库线的意义,STRING数据库全称

时间:2023-05-04 08:02:02 阅读:188621 作者:4161

What does the columns in proteins.actions file mean? 受伤的长颈鹿p>Here is a brief explanation of the column names for the action evidence.

item_id_a - identifier of protein Aitem_id_b - identifier of protein Bmode - type of interaction (e.g. "reaction", "expression", "activation", "ptmod"(post-translational modifications), "binding", "catalysis")action - the effect of the action ("inhibition", "activation")a_is_acting - the directionality of the action if applicable ('t' gives that item_id_a is acting upon item_id_b)is_directional - describes if the diractionality of the particular interaction is known.score - the combined score of all interactions in string.source - describes the source of inferred interaction is taken (bind, biocarta, biocyc, dip, grid, hprd, intact, kegg_pathways, mint, pdb, PID, reactome).transferred_sources - Sources used for transfer of evidence by homology/orthology from another species. (if two proteins are interacting in several other species it is plausible that it is interacting in close species where it has not been observed).

How do I import several interactions from STRING into Cytoscape. 受伤的长颈鹿/p>

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